Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015817928.1_cds_XP_016499375.1_13305
CDS Infomation

[gene=LOC107817988] [db_xref=GeneID:107817988] [protein=IQ domain-containing protein IQM6-like] [protein_id=XP_016499375.1] [location=join(81600..82072,82161..82275,82370..82435,82525..82613,82709..82796,83122..83361,83456..83557,83708..84427)] [gbkey=CDS]
Sequence

ATGGGCATATCGTTTTCCTGTCCATTTGCCAATTTGGATGATTTGAATAGTAGGTTGGAG
TCGTATTTAGTGAGAACGATAAGTTTTGGAAGTGACGGTAGGACTACATTGCAGCCTATA
AATTTCGTCAACCAAATTCCTGAACAGTCAAAAATGTTAAGGTCTTTGGGTTCTGGGAAG
ATGATTATTGAAGGAACTCTTAGTTTTAAAAGAAGGGAATTGGAGGCCAAGTTGGCACTC
AAGTCTCCTGTATTTGATAAGGAAGATAAGATGATGATAAGATCAGACAGCCGTAGGAGC
AGGGATGAAACTCCTGACAAATTGCATAGCATCTCTGAGAAGAATAGTCAGATTGTGCCA
CCAGAATACGGTGAACACAGAGATCGTGCTGCCTTAAAGTTGCAGAAGACATACAAAAGT
TTTCGGACTCGTAGGCAACTAGCAGATTGTGCAGTTCTAGTAGAGCAAAGATGGTGGAAG
CTATTAGATACTGTTGAACTCAAGCATAGTTCTATATCATTCTTTGACATTGAGAAACCT
CAAACTGCGGTTTCTCGTTGGTCTAGAGCATTAACTAGAGCTGCTAAGGTTGGTAAAGGT
CTGTCTAAAGATGAAAAGGCCTGTAAGCTTGCATTACAACATTGGCTTGAAGCAATTGAT
CCCCGGCATCGTTATGGTCACAATCTTCAATTTTATTACAATAACTGGCTCCAAGCTGAC
AGTAAACAGCCCTTCTTTTATTGGTTGGACATAGGTGATGGTAAAGAAATAAATCTTGAG
AAGTGCCTTAGGTCAAAACTTCATCAACAATGCATCAAGTATCTCGGTCCGATAGAGAGA
GAGGCATATGAAGTTGTGGTGGTGGATGGGAAGTTCATCCACAAGCAGAGCGGGAAGCTT
CTTGATACAAGGGGAGGCCCTCAAGATGCCAAGTGGATTTTTGTGCTAAGTGTGTCCAAG
ATCTTGTATGTCGGATTGAAGCAGAAAGGCACTTTTCAGCATTCGAGTTTTTTGGCTGGT
GGTGCCGCATTGTCTGCTGGGAGATTAGTGGTGGAAGATGGCGTTCTAAAGGTGGTCTGG
CCTCACAGTGGACATTATCTTCCCACAGAGGAGAATTTTGAAGAATTTATGTCATATCTT
GAGCAACAGAATATCGACATCAGTGTTATCCAGAAATCGCCCAGTGATGGGGAAGAAGCA
CCTTTTATAAGGAAAGAGAGTGGTTCCAGTCTGCGTAATAGTTTATCGGCACCAGATTTC
ACCAAATCTAGTGAAGAGAGCAAAGCCAAAAGCTCAGACAGGGGGAAGACAGATTCTACT
AGAAAGTATTGCAAGGACGCAGAGAGTTCAATACCACCATTGTCGAGACGATCCCGAGGA
TTAAGACCCCAAATTGCAGTAGAAATACCAGTAAAGGAAGGCATACTTGAGCTGTTCAAG
AAGGCAGGACAAGTGGAAGCGCCAAAGGACAGCATGCAGCAGTCAGTGGAAACTCCTGCA
GATGGATACGAAACAGCAGAAGAATATTTATCAGATACAGAGTTGTCAGTTTCAAAGAAG
AACTTATTTGATGAAAATGAAGAAGAGTATGGAGAACCTATCCCAAAAGAGAAGATAATG
AAGAGAATAAATTCACACAAAAGAATGAAGTCATATCAGTTGGCTAATCAGTTATCATGC
AAATGGAGTACAGGAGCTGGACCTCGGATAGGATGTATGAGGGACTATCCATCAGAGCTC
CAATTTCGCGTTATGGAGGAGGTGCAATTGTCTCCAAGATCTCCATTCAAAGCTGGTCGA
CTTCATACTTGTACACTTTTTTCTAGAGAAGTAACCGAGGAGAAAAGACCTTCAGGTTCT
GAAACACTAGTATATTCTGAATTAGTAGAGTAG

Peptide Sequence

PEP ID

XP_016499375.1
PEP Infomation

PREDICTED: IQ domain-containing protein IQM6-like [Nicotiana tabacum]
Sequence

MGISFSCPFANLDDLNSRLESYLVRTISFGSDGRTTLQPINFVNQIPEQSKMLRSLGSGK
MIIEGTLSFKRRELEAKLALKSPVFDKEDKMMIRSDSRRSRDETPDKLHSISEKNSQIVP
PEYGEHRDRAALKLQKTYKSFRTRRQLADCAVLVEQRWWKLLDTVELKHSSISFFDIEKP
QTAVSRWSRALTRAAKVGKGLSKDEKACKLALQHWLEAIDPRHRYGHNLQFYYNNWLQAD
SKQPFFYWLDIGDGKEINLEKCLRSKLHQQCIKYLGPIEREAYEVVVVDGKFIHKQSGKL
LDTRGGPQDAKWIFVLSVSKILYVGLKQKGTFQHSSFLAGGAALSAGRLVVEDGVLKVVW
PHSGHYLPTEENFEEFMSYLEQQNIDISVIQKSPSDGEEAPFIRKESGSSLRNSLSAPDF
TKSSEESKAKSSDRGKTDSTRKYCKDAESSIPPLSRRSRGLRPQIAVEIPVKEGILELFK
KAGQVEAPKDSMQQSVETPADGYETAEEYLSDTELSVSKKNLFDENEEEYGEPIPKEKIM
KRINSHKRMKSYQLANQLSCKWSTGAGPRIGCMRDYPSELQFRVMEEVQLSPRSPFKAGR
LHTCTLFSREVTEEKRPSGSETLVYSELVE

Transcript Sequence

Gene sequence data has not been registered.